PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29212.m000177
Common NameRCOM_0402930
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB_related
Protein Properties Length: 172aa    MW: 19452.7 Da    PI: 4.5655
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29212.m000177genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.81.2e-087302347
                     -HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47
                     +W+ Ia++++ gRt++++k++w++ 
    29212.m000177  7 RWSQIAARLP-GRTDNEIKNFWNST 30
                     5*********.***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.129135IPR017930Myb domain
SuperFamilySSF466892.2E-8539IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.5E-12532IPR009057Homeodomain-like
PfamPF002497.7E-7630IPR001005SANT/Myb domain
CDDcd001671.54E-6731No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MEKRKSRWSQ IAARLPGRTD NEIKNFWNST LKKRLKMNNN NNSNPSTASP NDSDSSEPRD  60
VIGNIIPMHD HDLMTMCMDS SSTSSASIQA MVAGVNNQFD PFSMLTNNGR FELTGAAGLF  120
DMPTCLTQSL KVEDMFGFEN HWQGENLRMG EWDLEGLMEN ISSFPFLDYQ VE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13036LKKRLKM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0346612e-45KM034661.1 Jatropha curcas clone JcMYB041 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015582546.11e-71PREDICTED: transcription factor MYB46
TrEMBLB9T0Y41e-127B9T0Y4_RICCO; R2r3-myb transcription factor, putative
STRINGPOPTR_0009s06630.11e-45(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77434128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08500.12e-22myb domain protein 83